{
  • "genome": "hg38",
  • "locus": "BRCA1",
  • "loadAlignmentTracks": [
    • {
      • "name": "HG00103",
      • "url": "https://s3.amazonaws.com/1000genomes/data/HG00103/alignment/HG00103.alt_bwamem_GRCh38DH.20150718.GBR.low_coverage.cram",
      • "indexURL": "https://s3.amazonaws.com/1000genomes/data/HG00103/alignment/HG00103.alt_bwamem_GRCh38DH.20150718.GBR.low_coverage.cram.crai",
      • "indexed": false,
      • "order": 1,
      • "height": 200,
      • "autoHeight": true,
      • "minHeight": 50,
      • "maxHeight": 500,
      • "visibilityWindow": 30000,
      • "removable": true,
      • "headers": null,
      • "oauthToken": null,
      • "sourceType": null,
      • "showCoverage": true,
      • "showAlignments": true,
      • "viewAsPairs": false,
      • "pairsSupported": true,
      • "coverageColor": null,
      • "color": "rgb(170, 170, 170)",
      • "deletionColor": "black",
      • "displayMode": "EXPANDED",
      • "groupBy": null,
      • "samplingWindowSize": 100,
      • "samplingDepth": 100,
      • "readGroup": null,
      • "sort": null,
      • "filter": null,
      • "showSoftClips": false,
      • "showMismatches": true,
      • "showAllBases": false,
      • "showInsertionText": false,
      • "insertionTextColor": "white",
      • "alignmentRowHeight": 14,
      • "squishedRowHeight": 3,
      • "colorBy": "strand",
      • "insertionColor": "rgb(138, 94, 161)",
      • "negStrandColor": "rgba(150, 150, 230, 0.75)"
      }
    ],
  • "loadVariantTracks": [],
  • "loadAnnotationTracks": [],
  • "removeTracks": []
}

Alignment Summary

Alignment Summary